docs: fix spec issues from review — path normalization, field names, dedup

- Fix doc.source_file → doc.file_path (actual DesignDocument field name)
- Replace lstrip("./") with proper path resolution helpers
- Add deduplication for doc→doc edges (process only downstream)
- Add frontend/src/shared/types/api.ts to files changed
- Add fallback for unknown group_id in forceX/forceY
- Note build_panorama needs design_dir parameter
- Clarify runtime_component/document detail panel behavior

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

docs/superpowers/specs/2026-03-24-v2-fix-gaps-design.md

@@ -52,6 +52,8 @@ cross-layer     0.50            0.85
 
 **Implementation:**
 
+**Note:** `build_panorama()` will need an additional `design_dir: str` parameter to convert `DesignDocument.file_path` (absolute) to design-dir-relative paths. This parameter is passed from the route handler which already has access to the project's design directory.
+
 1. Build `file_status_map: dict[str, str]` from `scan_result.file_statuses`:
    ```python
    file_status_map = {fs.path: fs.status.value for fs in scan_result.file_statuses}
@@ -105,16 +107,45 @@ class GraphNode:
 
 **Implementation in build_panorama():**
 
+**Path normalization note:** `DesignDocument.file_path` is an **absolute** path (e.g., `/home/user/project/design/business-architecture/01-scope-and-goals.md`), while `FileStatusEntry.path` is **relative** to the design directory (e.g., `business-architecture/01-scope-and-goals.md`). The `upstream`/`downstream` fields in frontmatter are relative paths (e.g., `../business-architecture/01-scope-and-goals.md`). All paths must be normalized to design-dir-relative format before comparison.
+
+Helper function:
+```python
+def _to_rel_path(doc_file_path: str, design_dir: str) -> str:
+    """Convert absolute doc.file_path to design-dir-relative path."""
+    from pathlib import PurePosixPath
+    try:
+        return str(PurePosixPath(doc_file_path).relative_to(design_dir))
+    except ValueError:
+        return doc_file_path
+
+def _resolve_ref_path(ref_path: str, doc_rel_path: str) -> str:
+    """Resolve a relative upstream/downstream ref against the doc's directory."""
+    from pathlib import PurePosixPath
+    doc_dir = str(PurePosixPath(doc_rel_path).parent)
+    resolved = str(PurePosixPath(doc_dir) / ref_path)
+    # Normalize away ../ segments
+    parts = []
+    for part in PurePosixPath(resolved).parts:
+        if part == '..':
+            if parts:
+                parts.pop()
+        else:
+            parts.append(part)
+    return str(PurePosixPath(*parts)) if parts else ""
+```
+
 Step 5.5 — Create document nodes:
 ```python
 file_to_doc: dict[str, str] = {}
 for doc in scan_result.design_documents:
-    file_to_doc[doc.source_file] = doc.doc_id
+    doc_rel = _to_rel_path(doc.file_path, design_dir)
+    file_to_doc[doc_rel] = doc.doc_id
     nodes.append(GraphNode(
         id=doc.doc_id,
         type="document",
         label=doc.title or doc.doc_id,
-        status=file_status_map.get(doc.source_file, "unknown"),
+        status=file_status_map.get(doc_rel, "unknown"),
         group_id="cross-layer",
     ))
     node_ids.add(doc.doc_id)
@@ -126,20 +157,27 @@ parent_doc_id = file_to_doc.get(_SOURCE_FILES.get(node_type))
 node = GraphNode(..., parent=parent_doc_id)
 ```
 
-Step 9 — Fix doc→doc edges using file path mapping:
+Step 9 — Fix doc→doc edges using file path mapping (with deduplication):
 ```python
-path_to_doc = {doc.source_file: doc.doc_id for doc in scan_result.design_documents}
+path_to_doc = {}
+doc_rel_paths = {}
 for doc in scan_result.design_documents:
-    for up_path in doc.upstream:
-        normalized = up_path.lstrip("./")
-        up_doc_id = path_to_doc.get(normalized)
-        if up_doc_id and up_doc_id in node_ids:
-            edges.append(GraphEdge(source=up_doc_id, target=doc.doc_id, relation="documents"))
+    doc_rel = _to_rel_path(doc.file_path, design_dir)
+    path_to_doc[doc_rel] = doc.doc_id
+    doc_rel_paths[doc.doc_id] = doc_rel
+
+seen_edges: set[tuple[str, str]] = set()
+for doc in scan_result.design_documents:
+    doc_rel = doc_rel_paths[doc.doc_id]
     for down_path in doc.downstream:
-        normalized = down_path.lstrip("./")
-        down_doc_id = path_to_doc.get(normalized)
+        resolved = _resolve_ref_path(down_path, doc_rel)
+        down_doc_id = path_to_doc.get(resolved)
         if down_doc_id and down_doc_id in node_ids:
-            edges.append(GraphEdge(source=doc.doc_id, target=down_doc_id, relation="documents"))
+            edge_key = (doc.doc_id, down_doc_id)
+            if edge_key not in seen_edges:
+                seen_edges.add(edge_key)
+                edges.append(GraphEdge(source=doc.doc_id, target=down_doc_id, relation="documents"))
+    # Only process downstream to avoid duplicates (A.downstream=B ↔ B.upstream=A)
 ```
 
 **Acceptance criteria:**
@@ -174,8 +212,8 @@ for doc in scan_result.design_documents:
   }
 
   simulation
-    .force('x', d3.forceX(d => groupPositions[d.group_id].x * width).strength(0.4))
-    .force('y', d3.forceY(d => groupPositions[d.group_id].y * height).strength(0.4))
+    .force('x', d3.forceX(d => (groupPositions[d.group_id] || groupPositions['cross-layer']).x * width).strength(0.4))
+    .force('y', d3.forceY(d => (groupPositions[d.group_id] || groupPositions['cross-layer']).y * height).strength(0.4))
     .force('collide', d3.forceCollide(30))
     .force('link', d3.forceLink(edges).id(d => d.id).distance(60))
   ```
@@ -269,6 +307,8 @@ Edge styles:
 | document | no API call, use node properties | — |
 | runtime_component | no API call, use node properties | — |
 
+**Note on non-API types:** For `document` and `runtime_component` nodes that have no detail API, the panel displays the basic `GraphNode` fields (`id`, `type`, `label`, `status`, `group_id`, `parent`). This is acceptable — these types have limited attributes. A detail API for these types can be added later if needed.
+
 **Panel layout:**
 ```
 ┌─ GraphDetail ──────────────────────────┐
@@ -411,6 +451,7 @@ Edge styles:
 | `frontend/src/modules/graph/components/GraphPanorama.vue` | Modify | F1, F4 |
 | `frontend/src/modules/graph/components/GraphDetail.vue` | Modify | F2, F5 |
 | `frontend/src/modules/graph/components/GraphLegend.vue` | New | F3 |
+| `frontend/src/shared/types/api.ts` | Modify | B3 (add `parent` field to `GraphNode` interface) |
 
 ## 5. Out of Scope